If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ), 'gf_id' => 'HOM05D000810', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000810' ), 'data_identifier' => 'HOM05D000810', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000810', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '729', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p17140' => 'bna', 'A01p34410' => 'bna', 'A03p36490' => 'bna', 'A03p41650' => 'bna', 'A03p56320' => 'bna', 'A04p22260' => 'bna', 'A05p28680' => 'bna', 'A05p28730' => 'bna', 'A05p38790' => 'bna', 'Aa31LG1G6870' => 'aar', 'Aa31LG3G270' => 'aar', 'Aa31LG3G2930' => 'aar', 'Aa31LG5G7140' => 'aar', 'Aa31LG8G7060' => 'aar', 'Actinidia02370' => 'ach', 'Actinidia02931' => 'ach', 'Actinidia06743' => 'ach', 'Actinidia06744' => 'ach', 'Actinidia08537' => 'ach', 'Actinidia13888' => 'ach', 'Actinidia13889' => 'ach', 'Actinidia21655' => 'ach', 'Actinidia21890' => 'ach', 'Actinidia23923' => 'ach', 'Actinidia23924' => 'ach', 'Actinidia26728' => 'ach', 'Actinidia26729' => 'ach', 'Actinidia26730' => 'ach', 'Actinidia29235' => 'ach', 'Actinidia29236' => 'ach', 'Actinidia33777' => 'ach', 'Actinidia34422' => 'ach', 'Actinidia36890' => 'ach', 'Actinidia36891' => 'ach', 'Actinidia38811' => 'ach', 'Ah.08g217800' => 'amhyb', 'Ah.08g219910' => 'amhyb', 'Ah.10g036930' => 'amhyb', 'Ah.15g098540' => 'amhyb', 'Ah.16g102500' => 'amhyb', 'AL3G21690' => 'aly', 'AL3G33950' => 'aly', 'AL41U10040' => 'aly', 'AL491U10030' => 'aly', 'AL4G23700' => 'aly', 'AL4G23750' => 'aly', 'AL4G23760' => 'aly', 'AL7G27130' => 'aly', 'Aqoxy1G00888' => 'aox', 'Aqoxy1G01177' => 'aox', 'Aqoxy2G02286' => 'aox', 'Aqoxy7G02728' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TJY4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9BI3G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJAR2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H68WEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDE77Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI2IUQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6FCCP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAI7HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64AFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YE7AHB' => 'arhy', 'AT2G29140' => 'ath', 'AT2G29190' => 'ath', 'AT2G29200' => 'ath', 'AT3G10360' => 'ath', 'AT3G20250' => 'ath', 'AT4G25880' => 'ath', 'ATR0559G113' => 'atr', 'ATR0626G013' => 'atr', 'ATR0680G177' => 'atr', 'ATR1132G072' => 'atr', 'Atru.chr1.2646' => 'acertr', 'Atru.chr1.2647' => 'acertr', 'Atru.chr1.2648' => 'acertr', 'Atru.chr1.2653_Atru.chr1.2654' => 'acertr', 'Atru.chr12.410' => 'acertr', 'Atru.chr12.411' => 'acertr', 'Atru.chr12.412' => 'acertr', 'Atru.chr12.826' => 'acertr', 'Atru.chr12.827' => 'acertr', 'Atru.chr3.3963' => 'acertr', 'Atru.chr3.3964' => 'acertr', 'Atru.chr3.3965' => 'acertr', 'AUR62001335' => 'cqu', 'AUR62001750' => 'cqu', 'AUR62012123' => 'cqu', 'AUR62020021' => 'cqu', 'AUR62021332' => 'cqu', 'AUR62025670' => 'cqu', 'AUR62033247' => 'cqu', 'AUR62040713' => 'cqu', 'BcaB01g01082' => 'bca', 'BcaB01g03132' => 'bca', 'BcaB01g03135' => 'bca', 'BcaB04g17844' => 'bca', 'BcaB04g19097' => 'bca', 'BcaB04g19098' => 'bca', 'BcaB06g26097' => 'bca', 'BcaB06g28284' => 'bca', 'BcaB06g28288' => 'bca', 'BcaC01g03571' => 'bca', 'BcaC01g03573' => 'bca', 'BcaC02g08108' => 'bca', 'BcaC05g28339' => 'bca', 'BcaC05g28345' => 'bca', 'BcaC05g29474' => 'bca', 'BcaC07g37671' => 'bca', 'BcaC09g48976' => 'bca', 'BcaNung01468' => 'bca', 'BcaNung06833' => 'bca', 'BolC1t02067H' => 'bol', 'BolC1t04342H' => 'bol', 'BolC3t16684H' => 'bol', 'BolC3t17384H' => 'bol', 'BolC4t27357H' => 'bol', 'BolC5t33136H' => 'bol', 'BolC7t45944H' => 'bol', 'BraA01t01670Z' => 'bra', 'BraA01t03538Z' => 'bra', 'BraA03t12816Z' => 'bra', 'BraA03t13317Z' => 'bra', 'BraA03t14702Z' => 'bra', 'BraA04t17778Z' => 'bra', 'BraA05t21744Z' => 'bra', 'BraA05t21750Z' => 'bra', 'C01p21470' => 'bna', 'C01p43860' => 'bna', 'C03p44090' => 'bna', 'C03p51000' => 'bna', 'C04p58320' => 'bna', 'C05p28260' => 'bna', 'C05p44080' => 'bna', 'C05p44140' => 'bna', 'C05p57810' => 'bna', 'C05p57820' => 'bna', 'C07p54560' => 'bna', 'C08p39010' => 'bna', 'CAN.G141.5' => 'can', 'CAN.G321.36' => 'can', 'CAN.G394.72' => 'can', 'CAN.G423.6' => 'can', 'CAN.G786.2' => 'can', 'CAN.G790.11' => 'can', 'CANSAT01G1333' => 'cansat', 'CANSAT11G1792' => 'cansat', 'CANSAT56G0988' => 'cansat', 'CANSAT56G2063' => 'cansat', 'CARHR007240' => 'chi', 'CARHR007260' => 'chi', 'CARHR084840' => 'chi', 'CARHR095860' => 'chi', 'CARHR233350' => 'chi', 'Carub.0003s0954' => 'cru', 'Carub.0003s2018' => 'cru', 'Carub.0004s0816' => 'cru', 'Carub.0004s1021' => 'cru', 'Carub.0004s1715' => 'cru', 'Carub.0007s1507' => 'cru', 'Carub.0183s0001' => 'cru', 'Carub.0183s0002' => 'cru', 'Ca_01308_v3' => 'car', 'Ca_01311_v3' => 'car', 'Ca_02041_v3' => 'car', 'Ca_05873_v3' => 'car', 'Ca_10550_v3' => 'car', 'Ca_20621_v3' => 'car', 'Ca_27796_v3' => 'car', 'CBR_g38449' => 'cbr', 'Cc01_g13230' => 'ccan', 'Cc02_g07540' => 'ccan', 'Cc02_g11060' => 'ccan', 'Cc04_g00050' => 'ccan', 'CDE02G3367' => 'cde', 'CDE04G2991' => 'cde', 'CDE06G1474' => 'cde', 'CDE09G0859' => 'cde', 'Cfa001446' => 'cfa', 'Cfa001685' => 'cfa', 'Cfa001689' => 'cfa', 'Cfa003438' => 'cfa', 'Cfa011537' => 'cfa', 'Cfa013430' => 'cfa', 'Ciclev10007330m.g' => 'ccl', 'Ciclev10027726m.g' => 'ccl', 'Ciclev10030588m.g' => 'ccl', 'Ciclev10030594m.g' => 'ccl', 'Ciclev10030613m.g' => 'ccl', 'CiPaw.01G208700' => 'cil', 'CiPaw.01G270100' => 'cil', 'CiPaw.02G185700' => 'cil', 'CiPaw.07G195000' => 'cil', 'CiPaw.08G033900' => 'cil', 'CiPaw.13G090500' => 'cil', 'CiPaw.14G066500' => 'cil', 'ClCG00G004580' => 'cla', 'ClCG02G019970' => 'cla', 'ClCG04G010840' => 'cla', 'ClCG05G021150' => 'cla', 'ClCG07G003510' => 'cla', 'ClCG07G014670' => 'cla', 'COL.COLO4_12170' => 'col', 'COL.COLO4_15099' => 'col', 'COL.COLO4_18564' => 'col', 'COL.COLO4_31145' => 'col', 'Cpa.g.c35287' => 'cpa', 'Cpa.g.c43775' => 'cpa', 'Cpa.g.c47061' => 'cpa', 'Cpa.g.c47951' => 'cpa', 'Cpa.g.sc1.431' => 'cpa', 'Cpa.g.sc176.3' => 'cpa', 'Cpa.g.sc53.108' => 'cpa', 'Cpa.g.sc53.110' => 'cpa', 'Cpa.g.sc609.2' => 'cpa', 'Cpa.g.sc81.108' => 'cpa', 'Cpa.g.sc95.30' => 'cpa', 'Cre07.g328250' => 'cre', 'Cre17.g746647' => 'cre', 'CsaV3_3G030470' => 'csa', 'CsaV3_5G008260' => 'csa', 'CsaV3_5G036100' => 'csa', 'CsaV3_6G016670' => 'csa', 'CSS0002363' => 'camsi', 'CSS0010364' => 'camsi', 'CSS0016544' => 'camsi', 'CSS0020268' => 'camsi', 'CSS0027403' => 'camsi', 'CSS0041886' => 'camsi', 'CSS0043240' => 'camsi', 'CSS0048192' => 'camsi', 'DCAR_005952' => 'dca', 'DCAR_006423' => 'dca', 'DCAR_007433' => 'dca', 'DCAR_015634' => 'dca', 'DCAR_018922' => 'dca', 'DCAR_027601' => 'dca', 'DCAR_028613' => 'dca', 'Dinv03366' => 'din', 'Dinv06763' => 'din', 'Dinv17035' => 'din', 'Dinv20332' => 'din', 'Dinv25403' => 'din', 'Dinv26036' => 'din', 'Dinv26444' => 'din', 'Dinv31215' => 'din', 'Dinv34272' => 'din', 'Dinv36407' => 'din', 'Dinv42981' => 'din', 'Dinv43118' => 'din', 'Duzib106G0980' => 'dzi', 'Duzib114G0399' => 'dzi', 'Duzib114G0626' => 'dzi', 'Duzib128G0492' => 'dzi', 'Duzib150G0564' => 'dzi', 'Duzib150G1381' => 'dzi', 'Duzib168G1334' => 'dzi', 'Duzib170G0812' => 'dzi', 'ECA233G2502' => 'eca', 'ECA236G0109' => 'eca', 'ECA236G4575' => 'eca', 'ECA238G3606' => 'eca', 'ECA240G3975' => 'eca', 'ECA248G3213' => 'eca', 'EL10Ac2g03099' => 'bvu', 'EL10Ac2g04718' => 'bvu', 'EL10Ac7g16054' => 'bvu', 'EL10Ac7g16970' => 'bvu', 'EL10Ac7g18152' => 'bvu', 'EL10Ac8g18318' => 'bvu', 'EL10As1g23080' => 'bvu', 'Eucgr.B02314' => 'egr', 'Eucgr.F04032' => 'egr', 'Eucgr.G02951' => 'egr', 'Eucgr.J01068' => 'egr', 'FAN01G0522' => 'fan', 'FAN01G0591' => 'fan', 'FAN01G0641' => 'fan', 'FAN01G1297' => 'fan', 'FAN02G1012' => 'fan', 'FAN02G1409' => 'fan', 'FAN03G1258' => 'fan', 'FAN03G2168' => 'fan', 'FAN05G2250' => 'fan', 'FAN05G2997' => 'fan', 'FAN06G0037' => 'fan', 'FAN06G0319' => 'fan', 'FAN06G1094' => 'fan', 'FAN06G1800' => 'fan', 'FAN07G1793' => 'fan', 'FAN09G0580' => 'fan', 'FAN09G3811' => 'fan', 'FAN10G0195' => 'fan', 'FAN10G0639' => 'fan', 'FAN10G2666' => 'fan', 'FAN11G0426' => 'fan', 'FAN12G2318' => 'fan', 'FAN14G0087' => 'fan', 'FAN16G2512' => 'fan', 'FAN17G2966' => 'fan', 'FAN21G2101' => 'fan', 'FAN22G1110' => 'fan', 'FAN25G0317' => 'fan', 'FvH4_3g36870' => 'fve', 'FvH4_4g07600' => 'fve', 'FvH4_6g36910' => 'fve', 'FvH4_7g18910' => 'fve', 'FvH4_7g22880' => 'fve', 'Glyma.09G057800' => 'gma', 'Glyma.10G209000' => 'gma', 'Glyma.11G136700' => 'gma', 'Glyma.11G137000' => 'gma', 'Glyma.11G137100' => 'gma', 'Glyma.12G060400' => 'gma', 'Glyma.12G060600' => 'gma', 'Glyma.13G099300' => 'gma', 'Glyma.15G035900' => 'gma', 'Glyma.15G163900' => 'gma', 'Glyma.17G060766' => 'gma', 'Glyma.17G060832' => 'gma', 'Glyma.20G181600' => 'gma', 'Gohir.A03G044800' => 'ghi', 'Gohir.A03G088700' => 'ghi', 'Gohir.A05G093700' => 'ghi', 'Gohir.A05G411800' => 'ghi', 'Gohir.A07G099800' => 'ghi', 'Gohir.A08G000900' => 'ghi', 'Gohir.D02G114000' => 'ghi', 'Gohir.D03G122100' => 'ghi', 'Gohir.D04G004200' => 'ghi', 'Gohir.D05G094200' => 'ghi', 'Gohir.D07G104100' => 'ghi', 'Gohir.D08G011700' => 'ghi', 'Gorai.001G112000' => 'gra', 'Gorai.003G129200' => 'gra', 'Gorai.004G005400' => 'gra', 'Gorai.005G128800' => 'gra', 'Gorai.009G097200' => 'gra', 'Gorai.012G005400' => 'gra', 'GSVIVG01016236001' => 'vvi', 'GSVIVG01016507001' => 'vvi', 'GSVIVG01024918001' => 'vvi', 'GSVIVG01024919001' => 'vvi', 'GSVIVG01029553001' => 'vvi', 'GSVIVG01031557001' => 'vvi', 'GSVIVG01035176001' => 'vvi', 'HanXRQChr01g0010451' => 'han', 'HanXRQChr03g0068341' => 'han', 'HanXRQChr05g0135201' => 'han', 'HanXRQChr05g0140941' => 'han', 'HanXRQChr06g0179001' => 'han', 'HanXRQChr06g0179571' => 'han', 'HanXRQChr08g0221001' => 'han', 'HanXRQChr08g0221131' => 'han', 'HanXRQChr11g0337201' => 'han', 'HanXRQChr11g0340771' => 'han', 'HanXRQChr11g0345701' => 'han', 'HanXRQChr12g0383721' => 'han', 'HanXRQChr14g0456671' => 'han', 'Haze_16184' => 'cav', 'Haze_16846' => 'cav', 'Haze_17097' => 'cav', 'Haze_21978' => 'cav', 'Haze_21980' => 'cav', 'Haze_24147' => 'cav', 'Haze_26733' => 'cav', 'Hma1.2p1_0022F.1_g014710' => 'hma', 'Hma1.2p1_0517F.1_g170840' => 'hma', 'Hma1.2p1_0751F.1_g212745' => 'hma', 'Hma1.2p1_0751F.1_g212750' => 'hma', 'Hma1.2p1_0757F.1_g213330' => 'hma', 'Hma1.2p1_0757F.1_g213360' => 'hma', 'Hma1.2p1_2954F.1_g330710' => 'hma', 'HPP92_012602' => 'vpl', 'HPP92_012603' => 'vpl', 'HPP92_014301' => 'vpl', 'HPP92_015166' => 'vpl', 'HPP92_026148' => 'vpl', 'Hund04928' => 'sun', 'Hund13786' => 'sun', 'Hund16066' => 'sun', 'Hund18592' => 'sun', 'Hund18893' => 'sun', 'Hund26319' => 'sun', 'Lalb_Chr01g0003501' => 'lal', 'Lalb_Chr02g0152171' => 'lal', 'Lalb_Chr04g0251081' => 'lal', 'Lalb_Chr04g0251091' => 'lal', 'Lalb_Chr06g0170351' => 'lal', 'Lalb_Chr15g0084081' => 'lal', 'Lalb_Chr17g0346321' => 'lal', 'Lalb_Chr18g0052511' => 'lal', 'Lalb_Chr19g0137961' => 'lal', 'Lalb_Chr21g0313771' => 'lal', 'Lj1A147T86' => 'lonja', 'Lj1C941G2' => 'lonja', 'Lj2C1068T5' => 'lonja', 'Lj2C18G5' => 'lonja', 'Lj3g0015932' => 'lja', 'Lj3g0017979' => 'lja', 'Lj4g0008073' => 'lja', 'Lj5g0012554' => 'lja', 'Lj6g0014025' => 'lja', 'Lj7A117T16' => 'lonja', 'Lj7A119T4' => 'lonja', 'Lj7A121T9' => 'lonja', 'Lj8A573G8' => 'lonja', 'Lj8A81T83' => 'lonja', 'Lj9A543G60' => 'lonja', 'LjContig00141g0002299' => 'lja', 'Lsat_1_v5_gn_1_119501' => 'lsa', 'Lsat_1_v5_gn_2_112881' => 'lsa', 'Lsat_1_v5_gn_2_118821' => 'lsa', 'Lsat_1_v5_gn_4_150321' => 'lsa', 'Lsat_1_v5_gn_4_40021' => 'lsa', 'Lsat_1_v5_gn_4_40041' => 'lsa', 'Lsat_1_v5_gn_5_168961' => 'lsa', 'Lsat_1_v5_gn_7_56480' => 'lsa', 'Lsat_1_v5_gn_8_13741' => 'lsa', 'Lsat_1_v5_gn_8_158740' => 'lsa', 'Lsat_1_v5_gn_8_17620' => 'lsa', 'Lsat_1_v5_gn_8_69540' => 'lsa', 'Lsat_1_v5_gn_8_73200' => 'lsa', 'Manes.01G170200' => 'mes', 'Manes.01G170300' => 'mes', 'Manes.02G129900' => 'mes', 'Manes.06G179701' => 'mes', 'Manes.07G095500' => 'mes', 'Manes.10G027800' => 'mes', 'Manes.10G049000' => 'mes', 'Manes.14G158384' => 'mes', 'Mapoly0051s0008' => 'mpo', 'MBI05_g29681_MAGBIO' => 'mbi', 'MBI05_g35625_MAGBIO' => 'mbi', 'MBI13_g31547_MAGBIO' => 'mbi', 'MBI14_g08033_MAGBIO' => 'mbi', 'MBI16_g18212_MAGBIO' => 'mbi', 'MBI18_g31601_MAGBIO' => 'mbi', 'MCO15G207' => 'mco', 'MD01G1104900' => 'mdo', 'MD01G1136900' => 'mdo', 'MD03G1087000' => 'mdo', 'MD07G1171400' => 'mdo', 'MD07G1201900' => 'mdo', 'MD09G1165700' => 'mdo', 'MD11G1096100' => 'mdo', 'MD13G1245500' => 'mdo', 'MD16G1252800' => 'mdo', 'MD16G1252900' => 'mdo', 'MD17G1161900' => 'mdo', 'Medtr1g094630' => 'mtr', 'Medtr2g036900' => 'mtr', 'Medtr2g097670' => 'mtr', 'Medtr4g064670' => 'mtr', 'Medtr5g080390' => 'mtr', 'Medtr8g022680' => 'mtr', 'MELO3C012411.2' => 'cme', 'MELO3C023878.2' => 'cme', 'MELO3C025897.2' => 'cme', 'MELO3C026713.2' => 'cme', 'Migut.B01090' => 'egut', 'Migut.C00333' => 'egut', 'Migut.D00886' => 'egut', 'Migut.F00760' => 'egut', 'Migut.F01724' => 'egut', 'Migut.I01203' => 'egut', 'Migut.J00818' => 'egut', 'Migut.L00015' => 'egut', 'Migut.M00629' => 'egut', 'MSTRG.10873' => 'ama', 'MSTRG.18564' => 'ama', 'MSTRG.19385' => 'ama', 'MSTRG.21218' => 'ama', 'MSTRG.8136' => 'ama', 'Nitab4.5_0000004g0060' => 'nta', 'Nitab4.5_0000004g0070' => 'nta', 'Nitab4.5_0000102g0270' => 'nta', 'Nitab4.5_0000751g0070' => 'nta', 'Nitab4.5_0000819g0060' => 'nta', 'Nitab4.5_0000880g0020' => 'nta', 'Nitab4.5_0001002g0080' => 'nta', 'Nitab4.5_0001472g0120' => 'nta', 'Nitab4.5_0002810g0010' => 'nta', 'Nitab4.5_0004325g0040' => 'nta', 'Nitab4.5_0004892g0020' => 'nta', 'Nitab4.5_0005136g0010' => 'nta', 'Nitab4.5_0005136g0020' => 'nta', 'Nitab4.5_0005664g0050' => 'nta', 'Nitab4.5_0005739g0010' => 'nta', 'Nitab4.5_0006561g0050' => 'nta', 'Nitab4.5_0021709g0010' => 'nta', 'Nitab4.5_0022700g0010' => 'nta', 'Nn2g11178' => 'nnu', 'Nn2g11554' => 'nnu', 'Nn2g13415' => 'nnu', 'Nn2g13755' => 'nnu', 'Nn8g40980' => 'nnu', 'Oeu000809.1' => 'oeu', 'Oeu000810.1' => 'oeu', 'Oeu002434.1' => 'oeu', 'Oeu002435.1' => 'oeu', 'Oeu004173.2' => 'oeu', 'Oeu009495.1' => 'oeu', 'Oeu017403.2' => 'oeu', 'Oeu020825.2' => 'oeu', 'Oeu026716.1' => 'oeu', 'Oeu029575.2' => 'oeu', 'Oeu038102.1' => 'oeu', 'Oeu049629.1' => 'oeu', 'Oeu049630.1' => 'oeu', 'Oeu053886.3' => 'oeu', 'Oeu064536.1' => 'oeu', 'Os01g0844800' => 'osa', 'Os01g0971900' => 'osa', 'Os02g0819300' => 'osa', 'Os04g0201200' => 'osa', 'Os04g0276200' => 'osa', 'Os05g0109600' => 'osa', 'Os05g0327100' => 'osa', 'Os08g0519800' => 'osa', 'Os09g0497100' => 'osa', 'Os12g0574400' => 'osa', 'Peaxi162Scf00038g02643' => 'pax', 'Peaxi162Scf00253g00515' => 'pax', 'Peaxi162Scf00265g00006' => 'pax', 'Peaxi162Scf00296g00722' => 'pax', 'Peaxi162Scf00440g00217' => 'pax', 'Peaxi162Scf00481g00319' => 'pax', 'PGR044G1034' => 'pgr', 'PGR102G0060' => 'pgr', 'PGR102G0508' => 'pgr', 'PGR102G1419' => 'pgr', 'PGR142G0995' => 'pgr', 'PGSC0003DMG400002143' => 'stu', 'PGSC0003DMG400006350' => 'stu', 'PGSC0003DMG400009166' => 'stu', 'PGSC0003DMG400030327' => 'stu', 'PGSC0003DMG401007428' => 'stu', 'Phvul.003G143000' => 'pvu', 'Phvul.007G097100' => 'pvu', 'Phvul.008G192100' => 'pvu', 'Phvul.009G237900' => 'pvu', 'Phvul.011G062200' => 'pvu', 'Phvul.011G062300' => 'pvu', 'Potri.001G243400' => 'ptr', 'Potri.003G009900' => 'ptr', 'Potri.006G165100' => 'ptr', 'Potri.008G004300' => 'ptr', 'Potri.008G036500' => 'ptr', 'Potri.008G058300' => 'ptr', 'Potri.009G034900' => 'ptr', 'Potri.010G201100' => 'ptr', 'Potri.010G225600' => 'ptr', 'Pp3c12_22620' => 'ppa', 'Pp3c16_13520' => 'ppa', 'Pp3c3_36740' => 'ppa', 'Pp3c3_36940' => 'ppa', 'Pp3c3_36952' => 'ppa', 'Pp3c3_36960' => 'ppa', 'Pp3c3_36976' => 'ppa', 'Pp3c8_2770' => 'ppa', 'Pp3c8_2780' => 'ppa', 'Pp3c8_3320' => 'ppa', 'Pp3c8_3323' => 'ppa', 'Prupe.1G079300' => 'ppe', 'Prupe.2G210200' => 'ppe', 'Prupe.2G238500' => 'ppe', 'Prupe.3G023300' => 'ppe', 'Prupe.6G071600' => 'ppe', 'Psat1g145760' => 'psa', 'Psat2g039920' => 'psa', 'Psat2g085520' => 'psa', 'Psat4g076920' => 'psa', 'Psat4g105200' => 'psa', 'Psat5g288000' => 'psa', 'Psat5g293960' => 'psa', 'Psat6g092000' => 'psa', 'Psat6g182040' => 'psa', 'Psat7g210840' => 'psa', 'PSO063G3242' => 'pso', 'PSO063G3740' => 'pso', 'PSO079G0035' => 'pso', 'PSO339G0343' => 'pso', 'PSO339G0942' => 'pso', 'PSO339G3390' => 'pso', 'PSO423G0285' => 'pso', 'PSO513G0041' => 'pso', 'PSO541G3657' => 'pso', 'PSO761G0504' => 'pso', 'QL01p030641' => 'qlo', 'QL05p088870' => 'qlo', 'QL08p054951' => 'qlo', 'QL08p060631' => 'qlo', 'QL11p004807' => 'qlo', 'RcHm_v2.0_Chr1g0362841' => 'rch', 'RcHm_v2.0_Chr1g0368031' => 'rch', 'RcHm_v2.0_Chr2g0149341' => 'rch', 'RcHm_v2.0_Chr4g0400221' => 'rch', 'RcHm_v2.0_Chr5g0066091' => 'rch', 'Rhsim01G0231000' => 'rsi', 'Rhsim03G0105400' => 'rsi', 'Rhsim03G0117500' => 'rsi', 'Rhsim07G0135200' => 'rsi', 'Rhsim08G0250700' => 'rsi', 'Rhsim09G0167400' => 'rsi', 'Rhsim09G0167500' => 'rsi', 'Rhsim13G0078100' => 'rsi', 'Sabra08G0001900' => 'sbr', 'Sabra08G0024600' => 'sbr', 'Sabra08G0042900' => 'sbr', 'Sabra09G0024900' => 'sbr', 'Sabra10G0155100' => 'sbr', 'Sabra15G0049700' => 'sbr', 'Sabra15G0070400' => 'sbr', 'Sabra15G0073700' => 'sbr', 'SalBow3G0076' => 'sbo', 'SalBow3G0900' => 'sbo', 'SalBow6G0968' => 'sbo', 'Sc10g0001760' => 'sci', 'Sc11g0007830' => 'sci', 'Sc12g0001290' => 'sci', 'Sc12g0011200' => 'sci', 'Sc14g0001380' => 'sci', 'Sc20g0001680' => 'sci', 'Sc20g0001690' => 'sci', 'Sed0004941' => 'sed', 'Sed0018439' => 'sed', 'Sed0022380' => 'sed', 'Sed0024049' => 'sed', 'Sed0025975' => 'sed', 'Sed0026498' => 'sed', 'SEGI_09065' => 'sgi', 'SEGI_29827' => 'sgi', 'SEGI_34780' => 'sgi', 'SEGI_40668' => 'sgi', 'SGA_v2.0_scaffold111G31537' => 'sas', 'SGA_v2.0_scaffold122G33262' => 'sas', 'SGA_v2.0_scaffold237G43863' => 'sas', 'SGA_v2.0_scaffold2G01364' => 'sas', 'SGA_v2.0_scaffold46G17347' => 'sas', 'SGA_v2.0_scaffold51G18704' => 'sas', 'SGA_v2.0_scaffold54G19481' => 'sas', 'SMO347G0433' => 'smo', 'SMO361G0083' => 'smo', 'SMO361G0352' => 'smo', 'Solyc03g123980.4' => 'sly', 'Solyc04g011580.4' => 'sly', 'Solyc06g005670.4' => 'sly', 'Solyc06g005730.2' => 'sly', 'Solyc06g005740.3' => 'sly', 'Solyc06g076340.3' => 'sly', 'Solyc11g008490.3' => 'sly', 'Sopen03g041720' => 'spe', 'Sopen04g005760' => 'spe', 'Sopen06g001650' => 'spe', 'Sopen06g001710' => 'spe', 'Sopen06g032750' => 'spe', 'Sopen11g004270' => 'spe', 'Sp3g08630' => 'spa', 'Sp3g18270' => 'spa', 'Sp4g11960' => 'spa', 'Sp4g11970' => 'spa', 'Sp4g12000' => 'spa', 'TAR369G0784' => 'tar', 'TAR560G0003' => 'tar', 'TAR625G0247' => 'tar', 'TAR625G0768' => 'tar', 'TAR625G1324' => 'tar', 'TAR633G1278' => 'tar', 'TAR633G2293' => 'tar', 'TAR636G1527' => 'tar', 'TAR636G3620' => 'tar', 'THA.LOC104803051' => 'tha', 'THA.LOC104810041' => 'tha', 'THA.LOC104810760' => 'tha', 'THA.LOC104810762' => 'tha', 'THA.LOC104810763' => 'tha', 'THA.LOC104810764' => 'tha', 'THA.LOC104816421' => 'tha', 'THA.LOC104817845' => 'tha', 'THA.LOC104826314' => 'tha', 'Thecc.06G056100' => 'tca', 'Thecc.09G181000' => 'tca', 'Thecc.09G317200' => 'tca', 'Thecc.10G037700' => 'tca', 'Thecc.10G079600' => 'tca', 'Thhalv10016184m.g' => 'esa', 'Thhalv10016185m.g' => 'esa', 'Thhalv10016189m.g' => 'esa', 'Thhalv10019985m.g' => 'esa', 'Thhalv10020002m.g' => 'esa', 'Thhalv10024383m.g' => 'esa', 'TPR.G14433' => 'tpr', 'TPR.G1916' => 'tpr', 'TPR.G23618' => 'tpr', 'TPR.G5638' => 'tpr', 'TPR.G9021' => 'tpr', 'TWI12G0419' => 'twi', 'TWI31G0953' => 'twi', 'TWI38G0492' => 'twi', 'TWI63G0047' => 'twi', 'TWI63G0404' => 'twi', 'TWI75G0866' => 'twi', 'TWI75G1335' => 'twi', 'TWI79G1132' => 'twi', 'unitig_26.g9139' => 'ugi', 'unitig_746.g26721' => 'ugi', 'unitig_899.g15259' => 'ugi', 'unitig_899.g15260' => 'ugi', 'vmacro03039' => 'vma', 'vmacro07126' => 'vma', 'vmacro07127' => 'vma', 'vmacro10221' => 'vma', 'vmacro14552' => 'vma', 'vmacro18740' => 'vma', 'VMungo0251G2172' => 'vmu', 'VMungo0647G0740' => 'vmu', 'VMungo0720G0985' => 'vmu', 'VMungo1127G0541' => 'vmu', 'VMungo1215G1751' => 'vmu', 'VMungo1309G1597' => 'vmu', 'Zm00001eb035700' => 'zma', 'Zm00001eb087930' => 'zma', 'Zm00001eb174630' => 'zma', 'Zm00001eb191290' => 'zma', 'Zm00001eb259050' => 'zma', 'Zm00001eb266980' => 'zma', 'Zm00001eb301130' => 'zma', 'Zm00001eb355970' => 'zma', 'Zm00001eb419690' => 'zma' ) $gf_id = 'HOM05D000810' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000810' ) $data_identifier = 'HOM05D000810' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'ach' => (int) 21, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 12, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 4, 'cpa' => (int) 11, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 28, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 5, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 10, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 11, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 6, 'sgi' => (int) 4, 'sas' => (int) 7, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419690' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1